Stopping Rust, the cancer of the automobile! If you can clean the area rusted that has some surface rust but is still useable with a wire brush or 3M rust buster pad. Blow the area well with high pressure air to get any debris from any rust pits. Then coat with a rust neutral. Permetex, Loctite and Duplicolor have these in spray can formula. Lowes sells a quart that is very similar to a product called OSPRO, this is my favorite. These products turn the rust to black once it is neutral. Then prime and prep for paint.
Note: It is always best to cut out the old rust, however this is not always possible. Air is the activator of rust. No air = No active rust. Sealing the metal will keep it from breathing. Just my .02